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Modeling of the spread of disease using Cellular Automata and Nearest Neighbor Interactions

Biological engineering, biotechnological engineering or bioengineering (including biological systems engineering) is the application of concepts and methods of physics, chemistry, mathematics, and computer science to solve problems in life sciences, using engineering's own analytical and synthetic methodologies and also its traditional sensitivity to the cost and practicality of the solution(s) arrived at. In this context, while traditional engineering applies physical and mathematical sciences to analyze, design and manufacture inanimate tools, structures and processes, biological engineering uses the same sciences, as well as the rapidly-developing body of knowledge known as molecular biology, to study many aspects of living organisms. An important application is the analysis and cost-effective solution of problems related to human health, but the field is much more general than that. For example, biomimetics is a branch of biological engineering which strives to understand how living organisms, as a result of the prolonged trial-and-error processes known as evolution, have solved difficult problems in the past, and to find ways to use this knowledge to solve similar problems in artificial systems. Systems biology, on the other hand, seeks to utilize the engineer's familiarity with complex artificial systems, and perhaps the concepts used in "reverse engineering", to facilitate the difficult process of recognition of the structure, function, and precise method of operation of complex biological systems.

Thus biological engineering is a science-based discipline founded upon the biological sciences in the same way that chemical engineering, electrical engineering, and mechanical engineering are based upon chemistry, electricity and magnetism, and classical mechanics, respectively.[1]

Biological engineering can be differentiated from its roots of pure biology or classical engineering in the following way. Biological studies often follow a reductionist approach in viewing a system on its smallest possible scale which naturally leads toward tools such as functional genomics. Engineering approaches, using classical design perspectives, are constructionist, building new devices, approaches, and technologies from component concepts. Biological engineering utilizes both kinds of methods in concert, relying on reductionist approaches to identify, understand, and organize the fundamental units which are then integrated to generate something new. [2] In addition, because it is an engineering discipline, biological engineering is fundamentally concerned with not just the basic science, but the practical application of the scientific knowledge to solve real-world problems in a cost-effective way.

Although engineered biological systems have been used to manipulate information, construct materials, process chemicals, produce energy, provide food, and help maintain or enhance human health and our environment, our ability to quickly and reliably engineer biological systems that behave as expected is at present less well developed than our mastery over mechanical and electrical systems. [3]

The differentiation between biological engineering and overlap with Biomedical Engineering can be unclear, as many universities now use the terms "bioengineering" and "biomedical engineering" interchangeably [4]. But according to Prof. Doug Lauffenberger of MIT [5] [6], Biological Engineering (like biotechnology) has a broader base which applies engineering principles to an enormous range of size and complexities of systems ranging from the molecular level - molecular biology, biochemistry, microbiology, pharmacology, protein chemistry, cytology, immunology, neurobiology and neuroscience (often but not always using biological substances) - to cellular and tissue-based methods (including devices and sensors), whole macroscopic organisms (plants, animals), and up increasing length scales to whole ecosystems. Neither biological engineering nor biomedical engineering is wholly contained within the other, as there are non-biological products for medical needs and biological products for non-medical needs.

ABET [7], the U.S.-based accreditation board for engineering B.S. programs, makes a distinction between Biomedical Engineering and Biological Engineering; however, the differences are quite small. Biomedical engineers must have life science courses that include human physiology and have experience in performing measurements on living systems while biological engineers must have life science courses (which may or may not include physiology) and experience in making measurements not specifically on living systems. Foundational engineering courses are often the same and include thermodynamics, fluid and mechanical dynamics, kinetics, electronics, and materials properties. [8] [9]

The word bioengineering was coined by British scientist and broadcaster Heinz Wolff in 1954. [10] The term bioengineering is also used to describe the use of vegetation in civil engineering construction. The term bioengineering may also be applied to environmental modifications such as surface soil protection, slope stabilisation, watercourse and shoreline protection, windbreaks, vegetation barriers including noise barriers and visual screens, and the ecological enhancement of an area. The first biological engineering program was created at Mississippi State University in 1967, making it the first biological engineering curriculum in the United States.[11] More recent programs have been launched at MIT [12] and Utah State University [13].

Biological Engineers or bioengineers are engineers who use the principles of biology and the tools of engineering to create usable, tangible, economically viable products. Biological Engineering employs knowledge and expertise from a number of pure and applied sciences, such as mass and heat transfer, kinetics, biocatalysts, biomechanics, bioinformatics, separation and purification processes, bioreactor design, surface science, fluid mechanics, thermodynamics, and polymer science. It is used in the design of medical devices, diagnostic equipment, biocompatible materials, renewable bioenergy, ecological engineering, and other areas that improve the living standards of societies.

In general, biological engineers attempt to either mimic biological systems in order to create products or modify and control biological systems so that they can replace, augment, or sustain chemical and mechanical processes. Bioengineers can apply their expertise to other applications of engineering and biotechnology, including genetic modification of plants and microorganisms, bioprocess engineering, and biocatalysis.

Because other engineering disciplines also address living organisms (e.g., prosthetics in mechanical engineering), the term biological engineering can be applied more broadly to include agricultural engineering and biotechnology. In fact, many old agricultural engineering departments in universities over the world have rebranded themselves as agricultural and biological engineering or agricultural and biosystems engineering. Biological engineering is also called bioengineering by some colleges and Biomedical engineering is called Bioengineering by others, and is a rapidly developing field with fluid categorization. The Main Fields of Bioengineering may be categorised as:

References

  1. ^ Cuello JC, Engineering to biology and biology to engineering, The bi-directional connection between engineering and biology in biological engineering design, Int J Engng Ed 2005, 21, 1-7
  2. ^ Riley MR, Introducing Journal of Biological Engineering, Journal of Biological Engineering 1,1, 2007, http://www.jbioleng.org,
  3. ^ Endy D, Foundations for engineering biology. Nature 438,449-4 2005, http://www.nature.com/nature/journal/v438/n7067/full/nature04342.html
  4. ^ NIH working definition of bioengineering http://www.becon.nih.gov/bioengineering_definition.htm accessed, 3/1/2007
  5. ^ http://web.mit.edu/be/index.shtml, 4/14/2011
  6. ^ http://web.mit.edu/be/people/lauffenburger.shtml, 4/14/2011
  7. ^ ABET http://www.abet.org/Linked%20Documents-UPDATE/Criteria%20and%20PP/A004%2010-11%20Accredition%20Policy%20and%20Procedure%20Manual%2011-05-09.pdf, accessed 9/8/2010.
  8. ^ Linsenmeier RA, Defining the Undergraduate Biomedical Engineering Curriculum http://www.vanth.org/curriculum/def_bme_curr.pdf
  9. ^ Johnson AT, Phillips WM: "Philosophical foundations of biological engineering". Journal of Engineering Education 1995 , 84:311-318
  10. ^ http://www.heinzwolff.co.uk/
  11. ^ http://www.abe.msstate.edu/Welcome/history.php
  12. ^ http://web.mit.edu/be/index.shtml
  13. ^ http://www.be.usu.edu/

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