The histone acetyltransferase KAT6B is required for hematopoietic stem cell development and function MI Bergamasco, N Ranathunga, W Abeysekera, CSN Li-Wai-Suen, ... Stem Cell Reports 19 (4), 469-485, 2024 | | 2024 |
Increasing histone acetylation improves sociability and restores learning and memory in KAT6B-haploinsufficient mice MI Bergamasco, HK Vanyai, AL Garnham, ND Geoghegan, AP Vogel, ... The Journal of Clinical Investigation 134 (7), 2024 | | 2024 |
ING4 and ING5 are essential for histone H3 lysine 14 acetylation and epicardial cell lineage development SYY Mah, HK Vanyai, CSN Li-Wai-Suen, AL Garnham, J Wynn, ... Development 151 (5), dev202617, 2024 | 1 | 2024 |
Systemic inflammatory response syndrome triggered by blood-borne pathogens induces prolonged dendritic cell paralysis and immunosuppression M Ashayeripanah, J Vega-Ramos, D Fernandez-Ruiz, S Valikhani, ... Cell Reports 43 (2), 2024 | 2 | 2024 |
Dividing out quantification uncertainty allows efficient assessment of differential transcript expression with edgeR PL Baldoni, Y Chen, S Hediyeh-zadeh, Y Liao, X Dong, ME Ritchie, W Shi, ... Nucleic Acids Research 52 (2), e13, 2024 | 6 | 2024 |
R topics documented MPY Chung Package ‘QTLEMM’, 2, 2024 | | 2024 |
Identification of aberrant luminal progenitors and mTORC1 as a potential breast cancer prevention target in BRCA2 mutation carriers R Joyce, R Pascual, L Heitink, BD Capaldo, F Vaillant, M Christie, M Tsai, ... Nature Cell Biology, 1-15, 2024 | 3 | 2024 |
Unraveling the diversity and functions of tissue-resident plasma cells J Tellier, I Tarasova, J Nie, CS Smillie, PL Fedele, WHJ Cao, JR Groom, ... Nature Immunology, 1-13, 2024 | 5 | 2024 |
edgeR 4.0: powerful differential analysis of sequencing data with expanded functionality and improved support for small counts and larger datasets Y Chen, L Chen, ATL Lun, PL Baldoni, GK Smyth bioRxiv, 2024.01. 21.576131, 2024 | 1 | 2024 |
Package ‘dglm’ G Smyth, PK Dunn, RW Corty, MG Smyth | | 2023 |
Three-dimensional genome architecture coordinates key regulators of lineage specification in mammary epithelial cells MJG Milevskiy, HD Coughlan, SR Kane, TM Johanson, S Kordafshari, ... Cell Genomics 3 (11), 2023 | 1 | 2023 |
Benchmarking long-read RNA-sequencing analysis tools using in silico mixtures X Dong, MRM Du, Q Gouil, L Tian, JS Jabbari, R Bowden, PL Baldoni, ... Nature Methods 20 (11), 1810-1821, 2023 | 24 | 2023 |
Venetoclax, alone and in combination with the BH3 mimetic S63845, depletes HIV-1 latently infected cells and delays rebound in humanized mice P Arandjelovic, Y Kim, JP Cooney, SP Preston, M Doerflinger, ... Cell Reports Medicine 4 (9), 2023 | 9 | 2023 |
Modelling group heteroscedasticity in single-cell RNA-seq pseudo-bulk data Y You, X Dong, YK Wee, MJ Maxwell, M Alhamdoosh, GK Smyth, ... Genome Biology 24 (1), 107, 2023 | 7 | 2023 |
Neither random nor censored: estimating intensity-dependent probabilities for missing values in label-free proteomics M Li, GK Smyth Bioinformatics 39 (5), btad200, 2023 | 5* | 2023 |
Survey of activation‐induced genome architecture reveals a novel enhancer of Myc WF Chan, HD Coughlan, M Ruhle, N Iannarella, C Alvarado, JR Groom, ... Immunology and Cell Biology 101 (4), 345-357, 2023 | | 2023 |
Overexpression of Lmo2 initiates T-lymphoblastic leukemia via impaired thymocyte competition HD Abdulla, R Alserihi, C Flensburg, W Abeysekera, MX Luo, DHD Gray, ... Journal of Experimental Medicine 220 (6), e20212383, 2023 | 4 | 2023 |
Stem cell plasticity, acetylation of H3K14, and de novo gene activation rely on KAT7 AJ Kueh, MI Bergamasco, A Quaglieri, B Phipson, CSN Li-Wai-Suen, ... Cell Reports 42 (1), 2023 | 10 | 2023 |
Unraveling the timeline of gene expression: a pseudotemporal trajectory analysis of single-cell RNA sequencing data J Cheng, GK Smyth, Y Chen F1000Research 12, 684, 2023 | 2 | 2023 |
The T2T-CHM13 reference genome has more accurate sequences for immunoglobulin genes than GRCh38 J Nie, J Tellier, I Tarasova, SL Nutt, GK Smyth bioRxiv, 2023.05. 24.542206, 2023 | 1 | 2023 |