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Challenges and opportunities in cryo-EM single-particle analysis

D Lyumkis - Journal of Biological Chemistry, 2019 - ASBMB
Cryogenic electron microscopy (cryo-EM) enables structure determination of
macromolecular objects and their assemblies. Although the techniques have been …

Microtubule-associated proteins: structuring the cytoskeleton

S Bodakuntla, AS Jijumon, C Villablanca… - Trends in cell …, 2019 - cell.com
Microtubule-associated proteins (MAPs) were initially discovered as proteins that bind to
and stabilize microtubules. Today, an ever-growing number of MAPs reveals a more …

CryoDRGN: reconstruction of heterogeneous cryo-EM structures using neural networks

ED Zhong, T Bepler, B Berger, JH Davis - Nature methods, 2021 - nature.com
Cryo-electron microscopy (cryo-EM) single-particle analysis has proven powerful in
determining the structures of rigid macromolecules. However, many imaged protein …

Improvement of cryo-EM maps by simultaneous local and non-local deep learning

J He, T Li, SY Huang - Nature Communications, 2023 - nature.com
Cryo-EM has emerged as the most important technique for structure determination of
macromolecular complexes. However, raw cryo-EM maps often exhibit loss of contrast at …

[BOOK][B] Advanced computing in electron microscopy

EJ Kirkland - 1998 - Springer
Earl J. Kirkland Third Edition Earl J. Kirkland Third Edition Page 1 Earl J. Kirkland Advanced
Computing in Electron Microscopy Third Edition Earl J. Kirkland Advanced Computing in …

Improvement of cryo-EM maps by density modification

TC Terwilliger, SJ Ludtke, RJ Read, PD Adams… - Nature …, 2020 - nature.com
A density-modification procedure for improving maps from single-particle electron cryogenic
microscopy (cryo-EM) is presented. The theoretical basis of the method is identical to that of …

New insights on the structure of electrochemically deposited lithium metal and its solid electrolyte interphases via cryogenic TEM

X Wang, M Zhang, J Alvarado, S Wang, M Sina… - Nano …, 2017 - ACS Publications
Lithium metal has been considered the “holy grail” anode material for rechargeable batteries
despite the fact that its dendritic growth and low Coulombic efficiency (CE) have crippled its …

Intrinsically disordered proteins: An overview

R Trivedi, HA Nagarajaram - International journal of molecular sciences, 2022 - mdpi.com
Many proteins and protein segments cannot attain a single stable three-dimensional
structure under physiological conditions; instead, they adopt multiple interconverting …

[PDF][PDF] Cryo-EM in molecular and cellular biology

HR Saibil - Molecular Cell, 2022 - cell.com
This review summarizes the current state of methods and results achievable by cryo-electron
microscopy (cryo-EM) imaging for molecular, cell, and structural biologists who wish to …

Electron microscopy studies of soft nanomaterials

Z Lyu, L Yao, W Chen, FC Kalutantirige… - Chemical …, 2023 - ACS Publications
This review highlights recent efforts on applying electron microscopy (EM) to soft (including
biological) nanomaterials. We will show how developments of both the hardware and …

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