Fast gapped-read alignment with Bowtie 2 B Langmead, SL Salzberg Nature methods 9 (4), 357-359, 2012 | 46633 | 2012 |
Ultrafast and memory-efficient alignment of short DNA sequences to the human genome B Langmead, C Trapnell, M Pop, SL Salzberg Genome biology 10, 1-10, 2009 | 23429 | 2009 |
HISAT: a fast spliced aligner with low memory requirements D Kim, B Langmead, SL Salzberg Nature methods 12 (4), 357-360, 2015 | 16826 | 2015 |
Improved metagenomic analysis with Kraken 2 DE Wood, J Lu, B Langmead Genome biology 20, 1-13, 2019 | 3593 | 2019 |
Tackling the widespread and critical impact of batch effects in high-throughput data JT Leek, RB Scharpf, HC Bravo, D Simcha, B Langmead, WE Johnson, ... Nature Reviews Genetics 11 (10), 733-739, 2010 | 2096 | 2010 |
Aligning short sequencing reads with Bowtie B Langmead Current protocols in bioinformatics 32 (1), 11.7. 1-11.7. 14, 2010 | 1400 | 2010 |
Increased methylation variation in epigenetic domains across cancer types KD Hansen, W Timp, HC Bravo, S Sabunciyan, B Langmead, ... Nature genetics 43 (8), 768-775, 2011 | 1215 | 2011 |
Ballgown bridges the gap between transcriptome assembly and expression analysis AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek Nature biotechnology 33 (3), 243-246, 2015 | 763 | 2015 |
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions KD Hansen, B Langmead, RA Irizarry Genome biology 13, 1-10, 2012 | 760 | 2012 |
Searching for SNPs with cloud computing B Langmead, MC Schatz, J Lin, M Pop, SL Salzberg Genome biology 10, 1-10, 2009 | 655 | 2009 |
Scaling read aligners to hundreds of threads on general-purpose processors B Langmead, C Wilks, V Antonescu, R Charles Bioinformatics 35 (3), 421-432, 2019 | 558 | 2019 |
Cloud-scale RNA-sequencing differential expression analysis with Myrna B Langmead, KD Hansen, JT Leek Genome biology 11, 1-11, 2010 | 436 | 2010 |
Reproducible RNA-seq analysis using recount2 L Collado-Torres, A Nellore, K Kammers, SE Ellis, MA Taub, KD Hansen, ... Nature biotechnology 35 (4), 319-321, 2017 | 392 | 2017 |
Cloud computing and the DNA data race MC Schatz, B Langmead, SL Salzberg Nature biotechnology 28 (7), 691-693, 2010 | 383 | 2010 |
Reversible switching between epigenetic states in honeybee behavioral subcastes BR Herb, F Wolschin, KD Hansen, MJ Aryee, B Langmead, R Irizarry, ... Nature neuroscience 15 (10), 1371-1373, 2012 | 365 | 2012 |
Computational pan-genomics: status, promises and challenges Briefings in bioinformatics 19 (1), 118-135, 2018 | 330 | 2018 |
Polyester: simulating RNA-seq datasets with differential transcript expression AC Frazee, AE Jaffe, B Langmead, JT Leek Bioinformatics 31 (17), 2778-2784, 2015 | 293 | 2015 |
Lighter: fast and memory-efficient sequencing error correction without counting L Song, L Florea, B Langmead Genome biology 15, 1-13, 2014 | 288 | 2014 |
Cloud computing for genomic data analysis and collaboration B Langmead, A Nellore Nature Reviews Genetics 19 (4), 208-219, 2018 | 285 | 2018 |
ReCount: a multi-experiment resource of analysis-ready RNA-seq gene count datasets AC Frazee, B Langmead, JT Leek BMC bioinformatics 12, 1-5, 2011 | 203 | 2011 |