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Ben Langmead
Ben Langmead
Associate Professor of Computer Science, Johns Hopkins University
Verified email at cs.jhu.edu - Homepage
Title
Cited by
Year
A scalable and unbiased discordance metric with H+
N Dyjack, DN Baker, V Braverman, B Langmead, SC Hicks
Biostatistics 25 (1), 188-202, 2024
12024
A tandem simulation framework for predicting mapping quality
B Langmead
Genome biology 18 (1), 152, 2017
212017
ALGORITHMS AND HIGH PERFORMANCE COMPUTING APPROACHES FOR SEQUENCING-BASED COMPARATIVE GENOMICS
BT Langmead
12012
Aligning short sequencing reads with Bowtie
B Langmead
Current protocols in bioinformatics 32 (1), 11.7. 1-11.7. 14, 2010
14062010
Alignment of next-generation sequencing reads
K Reinert, B Langmead, D Weese, DJ Evers
Annual review of genomics and human genetics 16, 133-151, 2015
1522015
Analysis of somatic mutations in 131 human brains reveals aging-associated hypermutability
T Bae, L Fasching, Y Wang, JH Shin, M Suvakov, Y Jang, S Norton, ...
Science 377 (6605), 511-517, 2022
342022
Analyzing whole genome bisulfite sequencing data from highly divergent genotypes
P Wulfridge, B Langmead, AP Feinberg, KD Hansen
Nucleic acids research 47 (19), e117-e117, 2019
33*2019
Arioc: high-throughput read alignment with GPU-accelerated exploration of the seed-and-extend search space
R Wilton, T Budavari, B Langmead, SJ Wheelan, SL Salzberg, AS Szalay
PeerJ 3, e808, 2015
64*2015
ASCOT identifies key regulators of neuronal subtype-specific splicing
JP Ling, C Wilks, R Charles, PJ Leavey, D Ghosh, L Jiang, CP Santiago, ...
Nature communications 11 (1), 137, 2020
652020
Ballgown bridges the gap between transcriptome assembly and expression analysis
AC Frazee, G Pertea, AE Jaffe, B Langmead, SL Salzberg, JT Leek
Nature biotechnology 33 (3), 243-246, 2015
7672015
Boiler: lossy compression of RNA-seq alignments using coverage vectors
J Pritt, B Langmead
Nucleic acids research 44 (16), e133-e133, 2016
52016
BSmooth: from whole genome bisulfite sequencing reads to differentially methylated regions
KD Hansen, B Langmead, RA Irizarry
Genome biology 13, 1-10, 2012
7652012
Burrows-wheeler transform and fm index
B Langmead
en. In: Technical Report (Jan. 2014), 41, 2018
72018
Cell-specific regulation of gene expression using splicing-dependent frameshifting
JP Ling, AM Bygrave, CP Santiago, RP Carmen-Orozco, VT Trinh, M Yu, ...
Nature communications 13 (1), 5773, 2022
102022
Centrifuger: lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification
L Song, B Langmead
Genome Biology 25 (1), 106, 2024
12024
Cliffy: robust 16S rRNA classification based on a compressed LCA index
OY Ahmed, C Boucher, B Langmead
bioRxiv, 2024.05. 25.595899, 2024
2024
Cloud computing and the DNA data race
MC Schatz, B Langmead, SL Salzberg
Nature biotechnology 28 (7), 691-693, 2010
3832010
Cloud Computing for Data Analysis: Toward the Plateau of Productivity.
B Langmead
Bio-IT World 9 (4), 2010
2010
Cloud computing for genomic data analysis and collaboration
B Langmead, A Nellore
Nature Reviews Genetics 19 (4), 208-219, 2018
2902018
Cloud-scale RNA-sequencing differential expression analysis with Myrna
B Langmead, KD Hansen, JT Leek
Genome biology 11, 1-11, 2010
4372010
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