List of Estonian Navy ships is a comprehensive listing of all ships that have been in service to the Estonian Navy.^[1][2][3]

• Lennuk (Izyaslav class)
• Wambola (Orfey class)

• Sulev (A class)

• Kalev (Kalev class)
• Lembit (Kalev class)

• Lembit (Gilyak class)
• Tasuja (converted icebreaker)
• Mardus (auxiliary gunboat)
• Meeme (auxiliary gunboat)
• Ahti (auxiliary gunboat)
• Ilmatar (auxiliary gunboat)
• Taara (auxiliary gunboat)
• Tartu (auxiliary gunboat)
• Uku (auxiliary gunboat)
• Vanemuine (auxiliary gunboat)

• Laine (former submarine escort ship)
• Pikker (Pikker class)

• Ristna (converted paddle steamer)
• Suurop (converted paddle steamer)

• Kalev (Teplokhod class, later renamed Keri)
• Tahkona (Teplokhod class)
• Olev (Teplokhod class, later renamed Vaindlo)
• Lehtma (Teplokhod class)

• Kalevipoeg (converted passenger ship)

• Ingerman
• Kotka

• EML Admiral Pitka (A230) (Beskytteren class)

• EML Tasuja (A432) (Lindormen class)
• EML Wambola (A433) (Lindormen class)

• EML Kalev (M414) (Frauenlob class)
• EML Olev (M415) (Frauenlob class)
• EML Vaindlo (M416) (Frauenlob class)

• EML Wambola (M311) (Lindau class)
• EML Sulev (M312) (Lindau class)
• EML Admiral Cowan (M313) (Sandown class)
• EML Sakala (M314) (Sandown class)
• EML Ugandi (M315) (Sandown class)

• EML Wambola (M411) (Kondor class)
• EML Sulev (M412) (Kondor class)
• EML Grif (P401) (Zhuk class)
• EML Leopard (P402) (Zhuk class)
• EML Ahti (A431) (Maagen class)
• EML Ristna (P422) (R class)
• EML Suurop (P423) (R class)
• EML Roland (P01) (NAVY 18 WP class)
• EML Risto (P02) (NAVY 18 WP class)
• EML Raju (P6372) (PATROL 45 WP class)
• EML Pikker (P6732) (Pikker class)
• EML Valve (P6745) (PATROL 24 class)

• EML Kindral Kurvits (P6731) (Kindral Kurvits class)