Bubendorf may refer to:
- in Switzerland
- Bubendorf, a municipality in the canton of Basel-Country
- a former German name for Boncourt, Switzerland, in the canton of Jura
- in Germany
- the place Bubendorf (Saxony) in the municipality of Frohburg, district Leipziger Land, Saxony
- in Austria
- Bubendorf (Wolfsbach), in the municipality Wolfsbach, Lower Austria
- Bubendorf (Pilgersdorf), in the municipality Pilgersdorf, Burgenland